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Apple Biodiversity Lab

software

LinkImpute

LinkImpute implements the LD-kNNi algorithm described in the following publication: 
Money D, Gardner KM, Migicovsky Z, Schwaninger H, Zhong GY, Myles S (2015) LinkImpute – fast and accurate genotype imputation for non-model organisms. G3: Genes, Genomes, Genetics 5:2383
LinkImpute.tar.gz - version 1.1.4. - program and manual
LinkImpute-src.tar.gz – version 1.1.4. - program, manual, source code and code documentation.

LinkImputeR
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LinkImputeR calls and imputes genotypes from next-generation DNA sequence data using .vcf files as input.  It is designed for non-model organisms since it requires neither ordered markers nor a reference panel of genotypes.  This software package is described in the following publication: Money D, Migicovsky Z, Gardner KM, Myles S (2017) LinkImputeR: user-guided genotype calling and imputation for non-model organisms. BMC Genomics 18:523
LinkImputeR.tar.gz - program and manual
LinkImputeR-src.tar.gz - program, manual, source code and code documentation.
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