LinkImpute
LinkImpute implements the LD-kNNi algorithm described in the following publication: Money D, Gardner KM, Migicovsky Z, Schwaninger H, Zhong GY, Myles S (2015) LinkImpute – fast and accurate genotype imputation for non-model organisms. G3: Genes, Genomes, Genetics 5:2383 [PubMed:26377960]
LinkImpute.tar.gz – program and manual.
LinkImpute-src.tar.gz – program, manual, source code and code documentation.
Inquiries about this software should be made to daniel.money@dal.ca
LinkImputeR
LinkImputeR calls and imputes genotypes from next-generation DNA sequence data using .vcf files as input. It is particularly well suited for non-model organisms with few genomic resources since it requires neither ordered markers nor a reference panel of genotypes. This software package is described in the following publication: Money D, Migicovsky Z, Gardner KM, Myles S (2017) LinkImputeR: user-guided genotype calling and imputation for non-model organisms. BMC Genomics 18:523 [PubMed:28693460]
LinkImputeR.tar.gz - program and manual
LinkImputeR-src.tar.gz - program, manual, source code and code documentation.
Inquiries about this software should be made to daniel.money@dal.ca
LinkImpute implements the LD-kNNi algorithm described in the following publication: Money D, Gardner KM, Migicovsky Z, Schwaninger H, Zhong GY, Myles S (2015) LinkImpute – fast and accurate genotype imputation for non-model organisms. G3: Genes, Genomes, Genetics 5:2383 [PubMed:26377960]
LinkImpute.tar.gz – program and manual.
LinkImpute-src.tar.gz – program, manual, source code and code documentation.
Inquiries about this software should be made to daniel.money@dal.ca
LinkImputeR
LinkImputeR calls and imputes genotypes from next-generation DNA sequence data using .vcf files as input. It is particularly well suited for non-model organisms with few genomic resources since it requires neither ordered markers nor a reference panel of genotypes. This software package is described in the following publication: Money D, Migicovsky Z, Gardner KM, Myles S (2017) LinkImputeR: user-guided genotype calling and imputation for non-model organisms. BMC Genomics 18:523 [PubMed:28693460]
LinkImputeR.tar.gz - program and manual
LinkImputeR-src.tar.gz - program, manual, source code and code documentation.
Inquiries about this software should be made to daniel.money@dal.ca