Package VCF.Changers

Class MaxDepthNoReadsChanger

  • All Implemented Interfaces:
    GenotypeChanger

    public class MaxDepthNoReadsChanger
    extends java.lang.Object
    implements GenotypeChanger
    Changes the genotype (the GT field) of genotype to unknown (./.) if the total number of reads is less than a threshold
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void change​(Genotype g)
      Change the given genotype
      • Methods inherited from class java.lang.Object

        equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • MaxDepthNoReadsChanger

        public MaxDepthNoReadsChanger​(int depth)
        Constructor
        Parameters:
        depth - The depth below which genotypes are set to unknown