Package Executable

Class Available


  • public class Available
    extends java.lang.Object
    Class that gets the appropiate object for filters and callers given the configuration describing the filter or caller
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static Caller getCaller​(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> config)
      Returns the caller for the given configuration
      static VCFFilter getFilter​(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> config)
      Returns the VCF filter for the given configuration
      static PositionFilter getPositionFilter​(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> config)
      Returns the Position filter for the given configuration
      • Methods inherited from class java.lang.Object

        equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Method Detail

      • getFilter

        public static VCFFilter getFilter​(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> config)
        Returns the VCF filter for the given configuration
        Parameters:
        config - The configuration
        Returns:
        The VCF filter
      • getPositionFilter

        public static PositionFilter getPositionFilter​(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> config)
        Returns the Position filter for the given configuration
        Parameters:
        config - The configuration
        Returns:
        The Position filter
      • getCaller

        public static Caller getCaller​(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> config)
        Returns the caller for the given configuration
        Parameters:
        config - The configuration
        Returns:
        The caller