Package VCF.Filters
Provides classes for filter a VCF.
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Interface Summary Interface Description VCFFilter Represents a VCF filter (either a position filter or a sample filter) -
Class Summary Class Description BiallelicFilter Filters positions for biallelic positionsHasDepthFilter Filter positions that do not have depth dataMAFFilter Filters positions based on minor allele frequencyParalogHWFilter Filters a position based on a Hardy-Weinburg test.PositionFilter Represents a position filterPositionMissing Filters a position based on a maximum allowed amount of missing genotypesSampleFilter Represents a sample filterSampleMissing Filters a sample based on a maximum allowed amount of missing genotypes