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T

TextProgress - Class in Utils
Draws and updates a progress bar to standard out
TextProgress(long) - Constructor for class Utils.TextProgress
Constructor
toPhred(double) - Static method in class Files.VCFData.Phred
 
topn(byte[][], int) - Method in class Correlation.Correlation
Calculates all-against-all LD and returns the top n sites most in LD with each site.
topn(byte[][], int, int) - Method in class Correlation.Correlation
Calculates the top n sites most in LD with a single site.
TopQueue<E extends java.lang.Comparable<E>,​V extends java.lang.Comparable<V>> - Class in Utils
Keeps track of the top n based on their assigned value.
TopQueue(int) - Constructor for class Utils.TopQueue
Constructor
TopQueue(int, boolean) - Constructor for class Utils.TopQueue
Constructor
toString() - Method in enum Files.VCFData.DataType
 
toString() - Method in class Files.VCFData.FilterDefinition
 
toString() - Method in class Files.VCFData.FormatDefinition
 
toString() - Method in class Files.VCFData.InfoDefinition
 
toString() - Method in class Files.VCFData.Position
 
toWriter(PrintWriter) - Method in class Files.VCFData.Data
 
toWriter(PrintWriter) - Method in class Files.VCFData.Meta
 
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