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F
- fastAccuracy(byte[][], Mask) - Method in class Methods.Knni
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Performs a fast accuracy calculation - only imputes those genotypes that were masked rather than all missing genotypes.
- fastAccuracy(byte[][], Mask) - Method in class Methods.KnniLD
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Performs a fast accuracy calculation - only imputes those genotypes that were masked rather than all missing genotypes.
- fastAccuracy(byte[][], Mask) - Method in class Methods.Mode
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Performs a fast accuracy calculation - only imputes those genotypes that were masked rather than all missing genotypes.
- fastAccuracy(byte[][], Mask, double[][]) - Method in class Methods.Knni
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Performs a fast accuracy calculation - only imputes those genotypes that were masked rather than all missing genotypes.
- Files - package Files
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Provides class for dealing with data files.
- Files.VCFData - package Files.VCFData
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Provides classes for dealing with VCF files.
- Files.VCFMappers - package Files.VCFMappers
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Provides classes that help convert string vcf data to other data types.
- FilterDefinition<D> - Class in Files.VCFData
- FilterDefinition(String) - Constructor for class Files.VCFData.FilterDefinition
- FilterDefinition(String, String) - Constructor for class Files.VCFData.FilterDefinition
- FLAG - Files.VCFData.DataType
- FLOAT - Files.VCFData.DataType
- FormatDefinition<D> - Class in Files.VCFData
- FormatDefinition(String) - Constructor for class Files.VCFData.FormatDefinition
- FormatDefinition(String, DataType, String, String, String, String) - Constructor for class Files.VCFData.FormatDefinition
- fromDoubleArray(double[][], List<Position>, List<String>, String, String) - Static method in class Files.VCF
- fromPhred(double) - Static method in class Files.VCFData.Phred
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