Package Combiner

Interface Combiner

  • All Known Implementing Classes:
    MaxDepthCombiner

    public interface Combiner
    Combines imputed and inferred genotypes to give a final called genotype
    • Method Detail

      • combine

        double[][][] combine​(double[][][] called,
                             double[][][] imputed,
                             int[][][] reads)
        Combines imputed and inferred genotypes for all genotypes in a table
        Parameters:
        called - The called genotype probabilities
        imputed - The imputed genotype probabilities
        reads - The read counts for each genotype
        Returns:
        The called probabilities
      • getConfig

        org.apache.commons.configuration2.tree.ImmutableNode getConfig()
        Get the config for the caller
        Returns:
        The config