A B C D E F G H I K L M N O P R S T U V W X
All Classes All Packages
All Classes All Packages
All Classes All Packages
L
- limitedtopn(byte[][], int, Set<Integer>) - Method in class Utils.Correlation.Correlation
-
Similar to topn except it only considers the given arrays
- limitedtopnvalues(byte[][], int, Set<Integer>) - Method in class Utils.Correlation.Correlation
-
Similar to limitedtopn except it returns correlations
- limitTo(V, V) - Method in class Utils.Distribution.ComparableDistribution
-
Create a new distribution only containing objects between lower and upper
- limitToPositions(List<PositionMeta>) - Method in class VCF.VCF
-
Limits the VCF to the given position.
- limitToSamples(List<String>) - Method in class VCF.VCF
-
Limits the VCF to the given samples.
- LinkImputeR - Class in Executable
-
Main class
- log(Log.Level, String) - Static method in class Utils.Log
-
Log a new message
- Log - Class in Utils
-
Very simple logger.
- Log.Level - Enum in Utils
-
Represents different levels of message output.
- LogBiasedBinomialCaller - Class in Callers
-
A biased binomial caller, that is one where each read is not equally likely in the case of a hetrozygote
- LogBiasedBinomialCaller(double, double) - Constructor for class Callers.LogBiasedBinomialCaller
-
Creates a biased caller with the given error and bias
- LogBiasedBinomialCaller(HierarchicalConfiguration<ImmutableNode>) - Constructor for class Callers.LogBiasedBinomialCaller
-
Creates the caller from the given configuration
- LogBinomialCaller - Class in Callers
-
Simple binomial caller
- LogBinomialCaller(double) - Constructor for class Callers.LogBinomialCaller
-
Creates the caller with the given error
- LogBinomialCaller(HierarchicalConfiguration<ImmutableNode>) - Constructor for class Callers.LogBinomialCaller
-
Creates the caller from the given configuration
All Classes All Packages