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W
- writeControl(List<ImmutableNode>) - Method in class Executable.Output
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Write the control file (for the final imputation step)
- writeEachMasked(List<SingleGenotypeCall>, List<SingleGenotypeCall>, String[], PositionMeta[]) - Method in class Executable.PrintStats
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Writes data on each masked sample / snp if appropriate
- writeFile(File) - Method in class VCF.VCF
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Writes the VCF to a file.
- writeStats(AccuracyStats, AccuracyStats, AccuracyStats) - Method in class Executable.PrintStats
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Write stats to the appropriate files
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