Class SingleGenotypeMasked

    • Constructor Detail

      • SingleGenotypeMasked

        public SingleGenotypeMasked​(int sample,
                                    int snp,
                                    int[] original,
                                    int[] maskedTo,
                                    double maf)
        Constructor
        Parameters:
        sample - The sample position
        snp - The snp position
        original - The original read counts
        maskedTo - The masked read counts
        maf - The minor allele frequency for the position of this genotype
    • Method Detail

      • getMasked

        public int[] getMasked()
        Get the masked read counts
        Returns:
        The masked read counts
      • getMaskedDepth

        public int getMaskedDepth()
        Get the masked depth
        Returns:
        The masked depth
      • getOriginal

        public int[] getOriginal()
        Get the original read counts
        Returns:
        The original read counts
      • getMaf

        public double getMaf()
        Get the minor allele frequency for the position of this genotypes
        Returns:
        The minor allele frequency