Interface | Description |
---|---|
VCFFilter |
Represents a VCF filter (either a position filter or a sample filter)
|
Class | Description |
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BiallelicFilter |
Filters positions for biallelic positions
|
HasDepthFilter |
Filter positions that do not have depth data
|
MAFFilter |
Filters positions based on minor allele frequency
|
ParalogHWFilter |
Filters a position based on a Hardy-Weinburg test.
|
PositionFilter |
Represents a position filter
|
PositionMissing |
Filters a position based on a maximum allowed amount of missing genotypes
|
SampleFilter |
Represents a sample filter
|
SampleMissing |
Filters a sample based on a maximum allowed amount of missing genotypes
|