public class SingleGenotypeMasked extends SingleGenotypePosition
Constructor | Description |
---|---|
SingleGenotypeMasked(int sample,
int snp,
int[] original,
int[] maskedTo,
double maf) |
Constructor
|
Modifier and Type | Method | Description |
---|---|---|
double |
getMaf() |
Get the minor allele frequency for the position of this genotypes
|
int[] |
getMasked() |
Get the masked read counts
|
int |
getMaskedDepth() |
Get the masked depth
|
int[] |
getOriginal() |
Get the original read counts
|
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getSample, getSNP, samePosition, samePositions
public SingleGenotypeMasked(int sample, int snp, int[] original, int[] maskedTo, double maf)
sample
- The sample positionsnp
- The snp positionoriginal
- The original read countsmaskedTo
- The masked read countsmaf
- The minor allele frequency for the position of this genotypepublic int[] getMasked()
public int getMaskedDepth()
public int[] getOriginal()
public double getMaf()