VCFFilter
SampleMissing
public abstract class SampleFilter extends java.lang.Object implements VCFFilter
Constructor | Description |
---|---|
SampleFilter() |
Modifier and Type | Method | Description |
---|---|---|
void |
change(VCF vcf) |
Apply this filter to a VCF
|
abstract boolean |
test(Sample s) |
Tests whether a sample should be filtered out
|
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getConfig, getSummary
public abstract boolean test(Sample s) throws VCFDataException
s
- The sample to testVCFDataException
- If there is a problem with the
data in the VCFpublic void change(VCF vcf) throws VCFDataException
VCFFilter
change
in interface VCFFilter
vcf
- The VCFVCFDataException
- If there is a problem with the
data in the VCF