VCFFilter
public class BiallelicFilter extends PositionFilter
Constructor | Description |
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BiallelicFilter() |
Constructor
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BiallelicFilter(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> params) |
Constructor from a config (read in from a XML file)
|
Modifier and Type | Method | Description |
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org.apache.commons.configuration2.tree.ImmutableNode |
getConfig() |
Get the config for this filter
|
java.lang.String |
getSummary() |
Gets a string summary of this filter
|
boolean |
test(Position p) |
Tests whether a position should be filtered out
|
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
change
public BiallelicFilter()
public BiallelicFilter(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> params)
params
- The configpublic boolean test(Position p)
PositionFilter
test
in class PositionFilter
p
- The position to testpublic org.apache.commons.configuration2.tree.ImmutableNode getConfig()
VCFFilter
public java.lang.String getSummary()
VCFFilter