MaxDepthCombiner
public interface Combiner
Modifier and Type | Method | Description |
---|---|---|
double[][][] |
combine(double[][][] called,
double[][][] imputed,
int[][][] reads) |
Combines imputed and inferred genotypes for all genotypes in a table
|
java.util.List<SingleGenotypeProbability> |
combine(java.util.List<SingleGenotypeProbability> called,
java.util.List<SingleGenotypeProbability> imputed,
java.util.List<SingleGenotypeReads> reads) |
Combines imputed and inferred genotypes for a list of genotypes
|
org.apache.commons.configuration2.tree.ImmutableNode |
getConfig() |
Get the config for the caller
|
double[][][] combine(double[][][] called, double[][][] imputed, int[][][] reads)
called
- The called genotype probabilitiesimputed
- The imputed genotype probabilitiesreads
- The read counts for each genotypejava.util.List<SingleGenotypeProbability> combine(java.util.List<SingleGenotypeProbability> called, java.util.List<SingleGenotypeProbability> imputed, java.util.List<SingleGenotypeReads> reads)
called
- The called genotype probabilitiesimputed
- The imputed genotype probabilitiesreads
- The read counts for each genotypeorg.apache.commons.configuration2.tree.ImmutableNode getConfig()