C
- The class of the optimized combinerMaxDepthCombinerOptimizedCalls
public interface OptimizeCombiner<C extends Combiner>
Modifier and Type | Method | Description |
---|---|---|
org.apache.commons.configuration2.tree.ImmutableNode |
getConfig() |
Get the config for the optimizable combiner
|
C |
getOptimized(java.util.List<SingleGenotypeProbability> called,
java.util.List<SingleGenotypeProbability> imputed,
java.util.List<SingleGenotypeReads> reads,
java.util.List<SingleGenotypeCall> correct,
java.util.List<SingleGenotypeMasked> masked) |
Returns an optimized combiner for the given inputs
|
C getOptimized(java.util.List<SingleGenotypeProbability> called, java.util.List<SingleGenotypeProbability> imputed, java.util.List<SingleGenotypeReads> reads, java.util.List<SingleGenotypeCall> correct, java.util.List<SingleGenotypeMasked> masked)
called
- The called genotype probabilitiesimputed
- The imputed genotype probabilitiesreads
- The read depthscorrect
- The correct genotypesmasked
- A list of masked genotypesorg.apache.commons.configuration2.tree.ImmutableNode getConfig()