Constructor | Description |
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MaxDepthCombiner(double w,
int maxDepth) |
Constructor
|
MaxDepthCombiner(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> params) |
Creates the combiner from the given configuration
|
Modifier and Type | Method | Description |
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double[][][] |
combine(double[][][] called,
double[][][] imputed,
int[][][] reads) |
Combines imputed and inferred genotypes for all genotypes in a table
|
java.util.List<SingleGenotypeProbability> |
combine(java.util.List<SingleGenotypeProbability> called,
java.util.List<SingleGenotypeProbability> imputed,
java.util.List<SingleGenotypeReads> reads) |
Combines imputed and inferred genotypes for a list of genotypes
|
org.apache.commons.configuration2.tree.ImmutableNode |
getConfig() |
Get the config for the caller
|
public MaxDepthCombiner(double w, int maxDepth)
w
- The weight to give to the imputed probabilitiesmaxDepth
- The depth above which only called genotypes are usedpublic MaxDepthCombiner(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> params)
params
- The configurationpublic double[][][] combine(double[][][] called, double[][][] imputed, int[][][] reads)
Combiner
public java.util.List<SingleGenotypeProbability> combine(java.util.List<SingleGenotypeProbability> called, java.util.List<SingleGenotypeProbability> imputed, java.util.List<SingleGenotypeReads> reads)
Combiner