BiallelicFilter
, HasDepthFilter
, MAFFilter
, ParalogHWFilter
, PositionFilter
, PositionMissing
, SampleFilter
, SampleMissing
public interface VCFFilter
Modifier and Type | Method | Description |
---|---|---|
void |
change(VCF vcf) |
Apply this filter to a VCF
|
org.apache.commons.configuration2.tree.ImmutableNode |
getConfig() |
Get the config for this filter
|
java.lang.String |
getSummary() |
Gets a string summary of this filter
|
void change(VCF vcf) throws VCFDataException
vcf
- The VCFVCFDataException
- If there is a problem with the
data in the VCFjava.lang.String getSummary()
org.apache.commons.configuration2.tree.ImmutableNode getConfig()