KnniLDProb
public interface Imputer
Modifier and Type | Method | Description |
---|---|---|
org.apache.commons.configuration2.tree.ImmutableNode |
getConfig() |
Get the config for the imputer
|
double[][][] |
impute(double[][][] probs,
int[][][] readCounts) |
Imputes a genotype table
|
java.util.List<SingleGenotypeProbability> |
impute(double[][][] probs,
int[][][] readCounts,
java.util.List<SingleGenotypeProbability> maskedprobs,
java.util.List<SingleGenotypeMasked> list) |
Imputes a list of genotypes.
|
double[][][] impute(double[][][] probs, int[][][] readCounts)
probs
- Genotype probabilities (from a caller)readCounts
- Read counts for each genotypejava.util.List<SingleGenotypeProbability> impute(double[][][] probs, int[][][] readCounts, java.util.List<SingleGenotypeProbability> maskedprobs, java.util.List<SingleGenotypeMasked> list)
probs
- Genotype probabilities (from a caller)readCounts
- Read counts for each genotypemaskedprobs
- Genotype probabilities (from a caller) using masked
readslist
- List of genotypes to imputeorg.apache.commons.configuration2.tree.ImmutableNode getConfig()