I
- The class of the optimized imputerKnniLDProbOptimizedCalls
public interface OptimizeImputer<I extends Imputer>
Modifier and Type | Method | Description |
---|---|---|
org.apache.commons.configuration2.tree.ImmutableNode |
getConfig() |
Get the config for this case
|
I |
getOptimized(double[][][] callprobs,
int[][][] readCounts,
java.util.List<SingleGenotypeProbability> maskedprob,
java.util.List<SingleGenotypeMasked> list) |
Get an optimized version of the imputer
|
I getOptimized(double[][][] callprobs, int[][][] readCounts, java.util.List<SingleGenotypeProbability> maskedprob, java.util.List<SingleGenotypeMasked> list)
callprobs
- Original called genotype probabilitiesreadCounts
- Read countsmaskedprob
- Masked genotype probabilitieslist
- List of masked sites and their genotypeorg.apache.commons.configuration2.tree.ImmutableNode getConfig()